July 11 is the premiere date for season five of Stargate: Atlantis. To get ready for that, let's consider the past season. It had some changes, to be sure. It wasn't the best season, but it did the job of furthering Atlantis' adventures.
The biggest change in the fourth season of SGA was at the captain's chair, so to speak. Weir was, basically, killed off and Samantha Carter from SG-1 took over. They gave her a nice offing: she sacrificed herself to save her team. This allowed the writers to pursue the Replicator storyline through the course of the season. Due to Weir's knowledge of Atlantis, Replicators built a replica of the city, only these were good Replicators, those seeking ascension. That's right, digital immortality. One of these good Replicators even went messianic — sacrificing herself to destroy the Replicator homeworld. The orbital battle above their world was outstanding, full of Earth battleships, Replicator battleships, and even Wraith battleships.
With that story arc preventing the Replicators from reaching Atlantis and with the city effectively hidden from the Wraith, some of season four was spent trying to do some character development. For example, "Missing" puts Keller and Teyla together on a mission. They end up being pursued by a bloodthirsty tribe and must work together to survive. Keller is forced to toughen up. Also, this story introduces the "missing Athosians" story line which consumes much of the latter half of the season.
"Quarantine" strands groups of the Atlantis team together in various parts of the city when it senses a virus and goes into lockdown mode. The pairings are both interesting and predictable. Rodney and his girlfriend are stuck together (which ends up killing the relationship); Sheppard and Teyla are together (they have "issues" to work out, like Sheppard's overprotective tendencies); and then there's Ronon and Keller. That was the most fun to watch as a romance rears its head. Then came episodes like "Outcast" and "Trio." They added little to the season or the characters.
Some other episodes of note were "Travelers" and "The Seer." They introduce factors that come into play later. For example, "The Seer" tells of a dark future for Atlantis. An old man has a vision of Atlantis being destroyed by Replicator warships. The team debates the veracity of his vision for about two episodes. Then it apparently comes true in "This Mortal Coil," where a Replicator version of Atlantis (that's right, built by the Replicators seeking ascension) is wiped out by the other Replicators.
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